PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun003357

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WOX

Protein Properties

Length: 260aa MW: 29414.6 Da PI: 5.1854

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45875880	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-17442	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.2e-21	78	138	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Vun003357 78 RQRWTPTAMQLQILERIFDQgTGTPSKEKIKEITAELsqhgQISETNVYNWFQNRRARSKR 138 89***************99************************************97 PP
2	Wus_type_Homeobox	104.4	7.5e-34	77	140	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++itaeL+++G+i+++NV++WFQNr+aR+++kq Vun003357 77 SRQRWTPTAMQLQILERIFDQGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 140 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-17	72	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.965	74	139	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.97E-18	76	141	IPR009057	Homeodomain-like
SMART	SM00389	2.4E-14	76	143	IPR001356	Homeobox domain
CDD	cd00086	1.35E-13	78	140	No hit	No description
Pfam	PF00046	3.5E-19	78	138	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
QKQRWQPNGN AEMMYVKVMT DEQLETLRKQ IAVYATICEQ LIEMHKTISS HQDLAGIRLG 60 NMYCDPLLGS GGHKIASRQR WTPTAMQLQI LERIFDQGTG TPSKEKIKEI TAELSQHGQI 120 SETNVYNWFQ NRRARSKRKQ QNVAPGVNAE SEVETEVDSK DKKTKADDFW SQLNVSAGPS 180 DNLGFQNHDD LQYLNENPES NKQDSVFPSD GSLRSTRNFN HVPVFDGLLS NPGNGYLTGK 240 IEAPENYDLY QPSDDFDMAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027925615.1	0.0	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	4e-79	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A4D6NKZ4	0.0	A0A4D6NKZ4_VIGUN; Uncharacterized protein
STRING	XP_007139251.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-80	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]