PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003395
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 259aa    MW: 29204.1 Da    PI: 8.4885
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45936848PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-26425PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA542.3e-17189223135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Vun003395 189 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 223
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.1E-15183237IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15185247No hitNo description
PROSITE profilePS5011411.108187219IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-13187221IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.42E-10188235No hitNo description
PROSITE patternPS003440189214IPR000679Zinc finger, GATA-type
PfamPF003204.8E-15189223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDVCRNVSVS GECQQELPTL DDLFSHQNME EDFGMEWLSV FVEDCFSSKP SCLLAPPGVE  60
SRSTSSSSKP SSTMQRPQQS YCPLQNFSVP GKARSKRKRL SAPRTKHTLS TWSHNFSTQV  120
LSSDPPLLKQ AYWLADSELI VPKKKDEEEV KVEIVVRKEK LGECCDEDEG EVNNSSNNNN  180
GQHPIPRRCT HCLAQRTPQW RAGPLGPKTL CNACGVRYKS GRLLPEYRPA KSPTFVSYLH  240
SNSHKRVMEM RMSVPSTQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027922532.10.0GATA transcription factor 9-like
TrEMBLA0A4D6LYT60.0A0A4D6LYT6_VIGUN; Uncharacterized protein
STRINGXP_007151835.11e-151(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-36GATA transcription factor 9