PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003444
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Whirly
Protein Properties Length: 257aa    MW: 28557.2 Da    PI: 10.1028
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45874660PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-25437PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly192.18.4e-60822172137
     Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101
                vyk+kaa+++ + +ptf++ldsg+++++r+G+++++++ +++erkydWek+q+falsatev++l+ ++s++s+effhdp++ +sn+G+vrk+l+++P ++
  Vun003444  82 VYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSMMMTFMHSIGERKYDWEKRQRFALSATEVGSLITMGSQDSSEFFHDPSMLSSNAGQVRKSLSIKPNAN 181
                9*************************************************************************************************** PP

     Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  G+fv+l+v n+l++++++fsvPv+ aefav++++
  Vun003444 182 NNGYFVSLTVVNNLLNTKDYFSVPVTTAEFAVMKTA 217
                **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.6E-7369236IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544476.36E-6373236IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.1E-5782216IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
XLLTEQVKKR KAFQNVQAIA VLHLTSSSRH RLLEVLSSRN VEVGDFLRNR RDFTHSAGIS  60
TTTNNYAAKG YASDRIFAPY TVYKGKAAFS LSPCLPTFTK LDSGTVVVDR RGSMMMTFMH  120
SIGERKYDWE KRQRFALSAT EVGSLITMGS QDSSEFFHDP SMLSSNAGQV RKSLSIKPNA  180
NNNGYFVSLT VVNNLLNTKD YFSVPVTTAE FAVMKTACSF ALPHIMGWDQ ITNQQSRGTV  240
GPQGKGGSQV LDLEWEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A9e-89672342169StWhy2
3n1i_A9e-89672342169protein StWhy2
3n1j_A9e-89672342169Protein StWhy2
3n1k_A9e-89672342169protein StWhy2
3n1l_A9e-89672342169protein StWhy2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13850RNVEVGDFLRNRR
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027931172.11e-179single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0347e-93WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A4D6KLV91e-175A0A4D6KLV9_VIGUN; Plant transcription factor
STRINGXP_007147230.11e-169(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.16e-91WHIRLY 2