PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003505
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 255aa    MW: 27908.4 Da    PI: 9.2995
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45793877PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-31473PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.48.1e-1493137347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
        Vun003505  93 PWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 137
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.105.2E-4320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.17486142IPR017930Myb domain
SuperFamilySSF466891.5E-1788142IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-1889140IPR006447Myb domain, plants
SMARTSM007171.2E-1090140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-1190136IPR009057Homeodomain-like
CDDcd001671.53E-993138No hitNo description
PfamPF002491.6E-1193137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCSS FRATFVGVRL FGVQLHISNS SSLTIKKSFS MDSLPLLSSP  60
SSSFSSSRIS IDDHLSDSDG LIVRPQDRKK GVPWTEEEHR TFLVGLEKLG KGDWRGISRN  120
YVTTRTPTQV ASHAQKYFIR LATLNKKKRR SSLFDLVGGS SNSKSGEIEN DVTLSLLQAQ  180
ETKQKDSDDC CEDEAGADHE AVMWLHPQMK SSSNNSIAAI PDLELTLSVS KGKAKTMEQT  240
KSTPGSFLLG PISVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027923683.10.0transcription factor MYBS3-like
SwissprotQ7XC573e-51MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A4D6LTS30.0A0A4D6LTS3_VIGUN; Uncharacterized protein
STRINGXP_007152917.11e-144(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.15e-53MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]