PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003657
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family E2F/DP
Protein Properties Length: 249aa    MW: 28152.3 Da    PI: 5.2254
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45852057PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-12768PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.41.8e-26280671
    E2F_TDP  6 Lrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
               Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Vun003657  2 LRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsngastpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 80
               8999999...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094047.5E-1161249IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.3E-44286IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-30280IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.08E-21281IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.0E-24280IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144582.74E-4185188IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.28E-4287201No hitNo description
SMARTSM011381.2E-7187247IPR014889Transcription factor DP, C-terminal
PfamPF087811.4E-4188213IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
XLRQFSMKVC EKVESKGRTT YNEVADELVA EFADPSNGAS TPDQQQYDEK NIRRRVYDAL  60
NVLMAMDIIS KDKKEIQWKG LPRTSLSDIE DLKTERLGLR NRIEKKASYL QELEDQYIGL  120
QKLIERNEQL YSSGNAPNGG VSLPFILVQT RPHATVEVEI SEDMQLVHFD FNSTPFELHD  180
DNYVLKAMKF CERSQNDNKP DNPPDGGEGS SMSSLYHAQI PSSVSNPPAR PPSSPPLPGI  240
LKARVKNEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-342851293PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027908631.10.0transcription factor-like protein DPB isoform X1
RefseqXP_027908632.10.0transcription factor-like protein DPB isoform X1
RefseqXP_027908633.10.0transcription factor-like protein DPB isoform X1
RefseqXP_027908634.10.0transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-125DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A4D6LUU50.0A0A4D6LUU5_VIGUN; Transcription factor Dp-1
STRINGXP_007157060.11e-167(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-126Transcription factor DP