PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun003757

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 246aa MW: 26492.3 Da PI: 6.676

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45820974	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-20982	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Vun003757 95 FSCNYCRRKFYSSQALGGHQNAH 117 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.72E-6	93	123	No hit	No description
PROSITE profile	PS50157	11.385	95	122	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MTPNLNLEPE NHSEGSSQVA SNVSLHEASY DLTKGSTTTS SCLTKDETDP GSVTLDLTLN 60 FNSSDSELKG SSDASSEVGA EPPASASATA TPRVFSCNYC RRKFYSSQAL GGHQNAHKRE 120 RTMAKRALRM GMFTERYTSL ASLPLHGSPF RSLGLEAHSA MHQRHVSSSL RTPDMRAAAR 180 FERNHFGSLV FVEDDDVGLF WPGSFRQVDQ GAGVTEGHVQ SSNPSLVPIV PPPPQASASP 240 DLTLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027918956.1	0.0	zinc finger protein 4-like
Refseq	XP_027918957.1	0.0	zinc finger protein 4-like
Refseq	XP_027918958.1	0.0	zinc finger protein 4-like
Refseq	XP_027918959.1	0.0	zinc finger protein 4-like
Refseq	XP_027918960.1	0.0	zinc finger protein 4-like
Refseq	XP_027918962.1	0.0	zinc finger protein 4-like
Refseq	XP_027918963.1	0.0	zinc finger protein 4-like
Refseq	XP_027918964.1	0.0	zinc finger protein 4-like
Swissprot	Q39263	2e-42	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A4D6L5D2	0.0	A0A4D6L5D2_VIGUN; Uncharacterized protein
STRING	XP_007158792.1	1e-159	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	2e-42	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]