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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TF ID | Vun003771 | ||||||||||||
| Organism | |||||||||||||
| Taxonomic ID | |||||||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family | WOX | ||||||||||||
| Protein Properties | Length: 246aa MW: 27979.4 Da PI: 9.4395 | ||||||||||||
| Description | WOX family protein | ||||||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 66.2 | 4.5e-21 | 100 | 159 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+++t+eq+ +Le l++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++
Vun003771 100 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITVQLskygKIEGKNVFYWFQNHKARERQ 159
7*****************99**************************************97 PP
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| 2 | Wus_type_Homeobox | 118.2 | 3.5e-38 | 100 | 161 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it +L++yGkie+kNVfyWFQN+kaRerqkq
Vun003771 100 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQ 161
8***********************************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00389 | 2.5E-6 | 97 | 164 | IPR001356 | Homeobox domain |
| SuperFamily | SSF46689 | 1.2E-11 | 99 | 163 | IPR009057 | Homeodomain-like |
| Pfam | PF00046 | 9.7E-19 | 100 | 159 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 4.80E-4 | 100 | 161 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 2.2E-7 | 101 | 159 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 9.847 | 105 | 160 | IPR001356 | Homeobox domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 246 aa Download sequence Send to blast |
GATSNSLTIT MKVHQFARGF WEHEPSLTLG CKRLRPLAPK LSNTDSTTSI TSSPVTTFDL 60 KSFIKPESAS RKLASSDDNK RDPTSPQGQG QVETHIPGGT RWNPTQEQIG ILEMLYRGGM 120 RTPNAQQIEQ ITVQLSKYGK IEGKNVFYWF QNHKARERQK QKRNNLGLAH SPRTPTTLVS 180 PSFSCSVITS LDTTKRGEVV ERDEEDSPLK KCRSWAFEYL EEQSWSSWKE EEQRTLELFP 240 LHPEGR |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027939440.1 | 0.0 | WUSCHEL-related homeobox 4-like | ||||
| Swissprot | Q6X7J9 | 5e-73 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
| TrEMBL | A0A4D6MDV7 | 0.0 | A0A4D6MDV7_VIGUN; Uncharacterized protein | ||||
| STRING | XP_007160869.1 | 1e-160 | (Phaseolus vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G46480.1 | 5e-71 | WUSCHEL related homeobox 4 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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