PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003810
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 244aa    MW: 27266.2 Da    PI: 5.5184
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45804405PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-17988PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.78.2e-20152232186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+ +ev++Li +r+e+ +r++  + +++lWee+s+k+ + g++rsp qCk+ w +l  +y+ ik+ + ++     +++py +++e
  Vun003810 152 KWKTDEVKKLIGMREELRDRFQVVRGRMALWEEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEKDSK-----KSWPYIEDME 232
                7****************************************************************999984.....56*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.258145209IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.4E-5146209IPR009057Homeodomain-like
PfamPF138372.0E-16150234No hitNo description
CDDcd122039.62E-17151216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
XPEVIAIAIE NPASTITDEI NAKLSGKTHA GLGISTAKRA VDRHEKGNQP HLTANYSIDN  60
ASGAEGYLSE EDNTASGAEG DLSESEDSDE FWKPFVTPLP VKKPLGAYNA YDAQKEHESN  120
LKKDDSKIIY EAKSEEISTS EPKSSKSVKR NKWKTDEVKK LIGMREELRD RFQVVRGRMA  180
LWEEISQKLL ADGISRSPGQ CKSLWTSLVL KYEGIKNEKD SKKSWPYIED MERIMSDKEA  240
PATK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027904328.11e-161ribonuclease J-like isoform X2
TrEMBLA0A4D6NKJ51e-157A0A4D6NKJ5_VIGUN; Uncharacterized protein
STRINGXP_007137930.11e-143(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.13e-45Trihelix family protein