PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003825
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 244aa    MW: 28070.3 Da    PI: 8.9685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45812331PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-34773PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l+++++ +G g+W+t a   g++Rt+k+c++rw++yl
        Vun003825 20 RGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYL 67
                     89********************************************97 PP
2Myb_DNA-binding51.13.1e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
        Vun003825  73 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 116
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0071567IPR017930Myb domain
SuperFamilySSF466891.24E-3017114IPR009057Homeodomain-like
SMARTSM007176.2E-141969IPR001005SANT/Myb domain
PfamPF002497.1E-162067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-212174IPR009057Homeodomain-like
CDDcd001674.28E-102267No hitNo description
PROSITE profilePS5129422.91768122IPR017930Myb domain
SMARTSM007172.9E-1472120IPR001005SANT/Myb domain
PfamPF002495.2E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2275121IPR009057Homeodomain-like
CDDcd001671.02E-693116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDEKGRTTSL LSEDEMELRR GPWTVDEDLT LINYIATHGE GRWNTLALSA GLKRTGKSCR  60
LRWLNYLRPD VRRGNITLEE QLLILELHSR WGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK  120
HAKQLKCDVN SKQFKDAMRY LWMPRLVERI QAAATATATT SVTTNDAYTS ENNLKNNHME  180
VHNNLKEKMG FIEPSPPMNN DFVASYVMQS HTPDNSSTAL SSSDSFGTQV STKSDLTDYY  240
SVPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-261711424120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027917059.10.0transcription factor MYB108-like
SwissprotQ2QZJ85e-90JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A4D6KUM11e-180A0A4D6KUM1_VIGUN; Myb proto-oncogene protein
STRINGXP_007158818.11e-141(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-85myb domain protein 108
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]