PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun003852

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 243aa MW: 27732.4 Da PI: 4.6735

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45809884	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-4459	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	38	89	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f+++q++ Le++Fe ++ + +++ +LA+ lgL+ rqV +WFqN+Ra++k Vun003852 38 RRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWK 89 48*************************************************9 PP
2	HD-ZIP_I/II	119	2.6e-38	37	127	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+s++q+k+LE++Fe+e++Lep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE+dy L+++y++l+++ e+L+ke+++L +l++ Vun003852 37 TRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQK 127 79***********************************************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.15E-18	15	93	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.1E-19	18	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.957	31	91	IPR001356	Homeobox domain
SMART	SM00389	3.5E-15	34	95	IPR001356	Homeobox domain
Pfam	PF00046	4.5E-16	38	89	IPR001356	Homeobox domain
CDD	cd00086	5.93E-14	38	92	No hit	No description
PRINTS	PR00031	1.8E-5	62	71	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	66	89	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-5	71	87	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.7E-16	91	133	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEYTYSAEGA ETETYTSSST TPSSAMRSSK KKANNNTRRF SDDQIKSLET MFETESRLEP 60 RKKLQLARDL GLQPRQVAIW FQNKRARWKS KQLERDYGIL QSNYNSLASR FEALKKEKQT 120 LLIQLQKLNH LMQKPLEGGQ SRTQVEAANS MDSESENGGT MKCEEEEKPS PSVERSEHVH 180 GVLSDDDGSI KVEDFGLEDE HGLLNFGEHA DDSLTSPEDW SAFESDGLLG QTTGDYQWWD 240 FWS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027906447.1	1e-180	homeobox-leucine zipper protein ATHB-12-like
Swissprot	P46897	1e-64	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A4D6MP83	1e-179	A0A4D6MP83_VIGUN; Homeobox-leucine zipper protein
STRING	XP_007135294.1	1e-153	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	4e-66	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]