PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun004034

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 237aa MW: 26962.1 Da PI: 5.8306

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45946834	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-33914	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.2	1.1e-19	100	150	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f ta eAaka+++a+ +++g Vun004034 100 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFETALEAAKAYDRAAFRFRG 150 8******.******96655..**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.4E-32	99	159	IPR001471	AP2/ERF domain
CDD	cd00018	7.00E-30	99	158	No hit	No description
PROSITE profile	PS51032	24.434	100	158	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-37	100	164	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.14E-22	100	159	IPR016177	DNA-binding domain
Pfam	PF00847	1.4E-13	100	150	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-13	101	112	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-13	140	160	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDDFFSDFFD FPTTSTTEDQ FSVFEIESKP QIIDYQTPNP QPQTSTSEFT FPNTHDRKKS 60 QTNRKPSLQV SLPKKTEWIQ FGEGEVAGNV VQQAAEEKKH YRGVRQRPWG KFAAEIRDPN 120 KRGSRVWLGT FETALEAAKA YDRAAFRFRG SKAILNFPLE AGADNRKRQR EEEEPVVEVV 180 KREKVEDFDV TCFRDAPLTP SSWPGFWGSD ANGIFAVPPL SPLSPHPALG YPQLMVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-31	99	159	4	64	ATERF1
3gcc_A	4e-31	99	159	4	64	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027913657.1	1e-176	ethylene-responsive transcription factor 6-like
Swissprot	O80341	2e-62	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A4D6LSK1	1e-174	A0A4D6LSK1_VIGUN; EREBP-like factor
STRING	XP_007157260.1	1e-124	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17490.1	5e-54	ethylene responsive element binding factor 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]