PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun004052
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRF
Protein Properties Length: 236aa    MW: 25996.2 Da    PI: 10.1555
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45923560PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-24608PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC83.22.2e-26140183144
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Vun004052 140 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 183
                79***************************************987 PP
2QLQ52.81.2e-1871107137
        QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                s+F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i+k
  Vun004052  71 SYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKK 107
                78*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-1071107IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-1372105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.50772107IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.808140184IPR014977WRC domain
PfamPF088791.1E-22141183IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
XLRLNQWRNQ HESEEQHSTK MPKLLPESHQ HPQTQSSASA LPLFVPEPNS KVSTLSDSTL  60
AATNRFPRMG SYFSLSQWQE LELQALIFRY MLAGAAVPPE LLQPIKKSLL HSPHYFLHHP  120
LQHYQPALLQ SGYWGRGAMD PEPGRCRRTD GKKWRCSRDV VAGQKYCERH MHRGRNRSRK  180
PVELPTPSSA NCGGGGGGSG GGAGSLGLGA SSSISSPPLA SASLKSPFDL LHLSER
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027915132.11e-150growth-regulating factor 3
SwissprotQ9SJR57e-72GRF3_ARATH; Growth-regulating factor 3
TrEMBLA0A4D6MB491e-168A0A4D6MB49_VIGUN; Growth-regulating factor
STRINGXP_007162865.11e-142(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.17e-73growth-regulating factor 3
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  3. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  4. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]