PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun004083
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 235aa    MW: 26956.9 Da    PI: 6.5195
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45804453PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-26698PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-15853148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv  v ++G ++W+ Ia+ ++  Rt+k+c++rw +yl
        Vun004083  8 KGPWTEQEDFKLVSFVGLFGDRRWDFIAKXLN--RTGKSCRLRWVNYL 53
                     79*****************************7..************97 PP
2Myb_DNA-binding54.92e-1759104148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
        Vun004083  59 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTLM 104
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.212353IPR017930Myb domain
SuperFamilySSF466892.25E-285100IPR009057Homeodomain-like
SMARTSM007172.1E-14755IPR001005SANT/Myb domain
PfamPF002497.4E-15853IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-21960IPR009057Homeodomain-like
CDDcd001673.00E-101053No hitNo description
PROSITE profilePS5129426.95754108IPR017930Myb domain
SMARTSM007176.2E-1758106IPR001005SANT/Myb domain
PfamPF002498.4E-1659103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2361107IPR009057Homeodomain-like
CDDcd001672.74E-1161104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVQQEIRKGP WTEQEDFKLV SFVGLFGDRR WDFIAKXLNR TGKSCRLRWV NYLHPGLKRG  60
KMTPQEERLV LELHSKWGNR WSRIARKLPG RTDNEIKNYW RTLMRKKAQE KKRGEAASSS  120
TATPSSSSSV HSSISVSSKK HEVDPHASKK AGEESFYDTG GASTQDEGEG EFSMDDIWKD  180
IDMSEENNSF VHGESEQVVS PSASSWEYCC CDPLWVMMDE ESLFMSEPYF YALSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-3151081105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027926068.11e-152transcription factor MYB48-like
SwissprotQ9LX821e-77MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A4D6NAX21e-150A0A4D6NAX2_VIGUN; Myb proto-oncogene protein
STRINGXP_007150291.11e-135(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-77myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]