PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun004095
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 235aa    MW: 26348.8 Da    PI: 7.1649
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45844048PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-8828PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.31.1e-3072125155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Vun004095  72 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 125
                59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05969128IPR017930Myb domain
SuperFamilySSF466891.79E-2069129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-3171130IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-2473125IPR006447Myb domain, plants
PfamPF002497.7E-875124IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MREDESNWFS KWEEELPSPE ELMPLSQTLI TPHLAVAFDI TNSSQNNHHQ QQQFPLQPPS  60
GAEEEPARTL KRPRLVWTPQ LHKRFVDAVA HLGIKNAVPK TIMQLMSVDG LTRENVASHL  120
QKYRLYLKRM QGLAGGAAAA DSATDHLFAS SPVPPHFLHP AARSASDHYL PFVPALQQHR  180
NHHHHMAVAA HFGSPRNAHF ELPVLSRMGA SVPGYVEDVE SERRKVLTLF PAGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-3372128157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027934567.11e-174transcription factor MYBC1-like
SwissprotO222106e-59MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A4D6N0391e-164A0A4D6N039_VIGUN; Two-component response regulator ARR-B family
STRINGXP_007145504.11e-135(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.11e-72G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]