PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun004133
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 233aa    MW: 25866.8 Da    PI: 6.5375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45831558PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-22963PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.45.9e-1460106455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YI++Lq
  Vun004133  60 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYINELQ 106
                799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1955119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.30156105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-1459110No hitNo description
PfamPF000102.2E-1160106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1860119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-1762111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
XQIDFTGATS RPSHVRPVVG DSELSDVEAS CKEEQPSVLD ERKPRKRGKK PANGREEPLN  60
HVEAERQRRE KLNQRFYALR SVVPNISKMD KASLLGDAIA YINELQAKVK IMETERERFG  120
STSKDGSVLE ANSRSENKNQ EKEAPDVDIE AAQDEVTVKV SCPFDTHPVS KVIQTLREAQ  180
ISVVESKLAA ANDTVFHTFV IKSKGPEQLT KDKLIAVFSP PESNQLQPLS SVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-3254116264Transcription factor MYC2
5gnj_B4e-3254116264Transcription factor MYC2
5gnj_E4e-3254116264Transcription factor MYC2
5gnj_F4e-3254116264Transcription factor MYC2
5gnj_G4e-3254116264Transcription factor MYC2
5gnj_I4e-3254116264Transcription factor MYC2
5gnj_M4e-3254116264Transcription factor MYC2
5gnj_N4e-3254116264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14149RKPRKRGKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027932143.11e-162transcription factor bHLH13-like
SwissprotA0A3Q7ELQ27e-97MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A4D6KSB81e-161A0A4D6KSB8_VIGUN; Transcription factor MYC2
STRINGXP_007147321.11e-147(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-78ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]