PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun004233
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 230aa    MW: 26520.9 Da    PI: 4.4864
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45916548PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-17973PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix1055.4e-3349134187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k ev+aLi++r++++++++++  k+plWe++s++m++ g++rs+k+Ckekwen+nk++kk++e++k+r  e+s+tcpyf++l+a
  Vun004233  49 RWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYSRSAKRCKEKWENINKYFKKVRENNKER-RENSKTCPYFHELDA 134
                8*********************************************************************8.78889********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.99242106IPR017877Myb-like domain
PfamPF138371.5E-2248135No hitNo description
CDDcd122031.59E-2549113No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
QNQTTTLQSQ PPTLNNNFEI KKLNNGHHSA TSTSTITVTT SPASSSSSRW PKAEVHALIR  60
LRTSLDTKYQ ENGPKAPLWE DISIAMQRLG YSRSAKRCKE KWENINKYFK KVRENNKERR  120
ENSKTCPYFH ELDAIYKEKS LSQNPFGVFQ NMKPNEMMMM EPLMVQPEQQ WRPPPHSEEG  180
MEKNSSEEYQ EKEEENGGDD DDDDDDDDHV VVEEDEDGVE DEACETGTND
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027925285.11e-120trihelix transcription factor GT-2-like
SwissprotQ391175e-45TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A4D6M0G91e-123A0A4D6M0G9_VIGUN; Uncharacterized protein
STRINGXP_007152025.11e-107(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-45Trihelix family protein