PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun004321

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C3H

Protein Properties

Length: 226aa MW: 24147.9 Da PI: 6.6518

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45805220	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-11401	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.2	1.1e-12	86	111	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f+++tG Ck+G+ C+F+H+ Vun004321 86 PGQPECQFYMKTGDCKFGAVCRFHHP 111 5789*********************8 PP
2	zf-CCCH	39.3	1.1e-12	132	158	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Vun004321 132 PGEPLCVFYSRYGICKFGPSCKFDHPM 158 589**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	9.4E-6	85	112	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.436	85	113	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-9	87	111	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.54E-6	89	115	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.9E-5	91	113	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.821	131	159	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.4E-7	131	158	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-9	133	158	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.46E-6	134	158	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-4	136	156	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
ASYAPLILPQ GVVSVPGWSA YGGQVGSIST SDSHQQAMRN GQTYGTSRQS ELANAGSPGA 60 YSQYRSGTVP VGFYALQREN IFPERPGQPE CQFYMKTGDC KFGAVCRFHH PSERLIPAPD 120 CVLSPMGLPL RPGEPLCVFY SRYGICKFGP SCKFDHPMGI FTYNISASPS ADAPSRHLLR 180 SSSGTAALNL SSEGLGESSS AATPRRLSLS ETRQIPSGDD DIDDDG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027937668.1	1e-146	zinc finger CCCH domain-containing protein ZFN-like
Swissprot	Q9SWF9	1e-128	ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBL	A0A4D6N5S9	1e-144	A0A4D6N5S9_VIGUN; Serine/threonine-protein kinase/endoribonuclease IRE1
STRING	XP_007143976.1	1e-141	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	4e-72	zinc finger protein 1