PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun004444
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 222aa    MW: 24124.7 Da    PI: 6.6427
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45883899PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-14280PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.41e-42691681100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e
  Vun004444  69 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAE 168
                7***********************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.18168169IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-4369166IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDYKLKTLTT PTTSSSPPIP IHVPTMLSNS PPSSSSSPPS HSPTPFPSPS QGSPPAAPPS  60
PPPPVVVSPC AACKILRRRC VEKCVLAPYF PPTDPLKFTI AHRVFGASNI IKFLQELPES  120
QRADAVSSMV YEANARIRDP VYGCAGAICQ LQKQVSELQA QLAKAQAELV NMQCQQANLV  180
ALICMEMSES QEQHMVQPQP HIDMSCFIED NSFGTAWEPL WT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-43601762118LOB family transfactor Ramosa2.1
5ly0_B2e-43601762118LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027935436.11e-161LOB domain-containing protein 1-like
SwissprotQ9LQR08e-77LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A4D6N2F01e-160A0A4D6N2F0_VIGUN; Carbamoyl-phosphate synthase large subunit
STRINGGLYMA20G31780.11e-115(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-62LOB domain-containing protein 1