PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun004459

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 222aa MW: 24433.3 Da PI: 9.6042

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45820052	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-3060	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.3	3.2e-33	11	69	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+ Vun004459 11 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 69 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-35	2	71	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-29	3	71	IPR003657	WRKY domain
PROSITE profile	PS50811	38.32	6	71	IPR003657	WRKY domain
SMART	SM00774	1.9E-37	11	70	IPR003657	WRKY domain
Pfam	PF03106	1.2E-25	12	69	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
XVQTTSEVDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTNA GCTVRKHVER ASHDLKSVIT 60 TYEGKHNHDV PAARASSHVN ANASNANQAS GVLHSHVHRP EPSQVHNGMG RLERPSLGSF 120 NLPGRQQLAH SHGFSFGMNQ PMLSNLAMSG LGHMQAKLPV MPVHPFLAQQ QQQNPSNDYG 180 FMMPKGEPNV EAIPEHVGGL NLPNGSSVYQ EIMSRMPLGP HM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-39	2	72	8	78	Probable WRKY transcription factor 4
2lex_A	1e-39	2	72	8	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269\|PubMed:21316593}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027925372.1	1e-151	probable WRKY transcription factor 2
Refseq	XP_027925381.1	1e-151	probable WRKY transcription factor 2
Refseq	XP_027925388.1	1e-151	probable WRKY transcription factor 2
Refseq	XP_027925397.1	1e-151	probable WRKY transcription factor 2
Swissprot	Q9FG77	1e-56	WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBL	A0A4D6M2I7	1e-149	A0A4D6M2I7_VIGUN; WRKY transcription factor 33
STRING	XP_007148682.1	1e-131	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	5e-55	WRKY DNA-binding protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] Lei R, et al. Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function. Plant J., 2017. 91(6): p. 962-976 [PMID:28635025]