PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun004525

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 220aa MW: 24934.9 Da PI: 8.676

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45926804	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-26863	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.4	1e-51	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrF Ptdeel+v+yL++kv+ ++ +i+evd+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g++v Vun004525 14 LPPGFRFYPTDEELLVQYLCRKVAXAPFFSLPIIAEVDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITT-EGRKV 112 79***********************888799***********8777899*********************************99.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkg+kt+W+mheyr+ Vun004525 113 GIKKALVFYVGKAPKGSKTNWIMHEYRV 140 **************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-63	10	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.783	14	165	IPR003441	NAC domain
Pfam	PF02365	1.7E-26	15	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGVPERDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAXAP FFSLPIIAEV DLYKFDPWVL 60 PAKAVFGEKE WYFFSPRDRK YPNGSRPNRV AGSGYWKATG TDKVITTEGR KVGIKKALVF 120 YVGKAPKGSK TNWIMHEYRV LDSSRKNNLG TTKLDDWVLC RIYKKNSSSQ KVEANLWAKE 180 CSNGSSPSSS SHVEDMVESF LEIDDQCFNF SGCGLDQINX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-103	1	171	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-103	1	171	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-103	1	171	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-103	1	171	4	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-103	1	171	4	171	NAC domain-containing protein 19
4dul_B	1e-103	1	171	4	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027908969.1	1e-142	NAC domain-containing protein 72-like
Swissprot	A0A3Q7HH64	1e-107	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A4D6LF17	1e-141	A0A4D6LF17_VIGUN; Uncharacterized protein
STRING	XP_007133057.1	1e-132	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	1e-106	NAC domain containing protein 3

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]