PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun004537
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 220aa    MW: 23600.3 Da    PI: 8.4841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45862817PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-8265PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-202777155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++y+GVr ++ +gr++AeIrdp +   ++r++lg+f++aeeAa+a++aa++ l+g
  Vun004537 27 PRYRGVRKRP-WGRFAAEIRDPLK---KARVWLGTFDSAEEAARAYDAAARTLRG 77
               68********.**********743...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-142777IPR001471AP2/ERF domain
CDDcd000185.25E-192787No hitNo description
Gene3DG3DSA:3.30.730.109.3E-332886IPR001471AP2/ERF domain
SMARTSM003801.7E-362891IPR001471AP2/ERF domain
PROSITE profilePS5103224.0262885IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-232887IPR016177DNA-binding domain
PRINTSPR003676.8E-112940IPR001471AP2/ERF domain
PRINTSPR003676.8E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MRKGRGGAAS VVTAAAAAAN GSLLKEPRYR GVRKRPWGRF AAEIRDPLKK ARVWLGTFDS  60
AEEAARAYDA AARTLRGPKA KTNFPLSHPF CYPHPTTSPL FYAGFNDTNH TSNVNNPQRP  120
TSSGMSSTVE SFSGPRPPIA AAAGTSATPF LTTTRRYPRT PPLVPEDCHS DCDSSSSVVD  180
DGDDNIVSSS FRPPLPFDLN APPFDDAATD DDLRCTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-212586264ATERF1
3gcc_A3e-212586264ATERF1
5wx9_A4e-2128881475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027941640.11e-159ethylene-responsive transcription factor 3-like
SwissprotO803393e-52ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A4D6MPH91e-157A0A4D6MPH9_VIGUN; EREBP-like factor
STRINGXP_007142329.11e-103(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.16e-31ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]