PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun004594

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

YABBY

Protein Properties

Length: 218aa MW: 24416.5 Da PI: 4.7526

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45916349	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-28920	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	201.7	3e-62	6	163	2	166
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++kas +lla+ shl+ ++ + e++ ++ +++sas + Vun004594 6 HLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASfvpfHLLASLSHLEP--------KESSPEQHDGNKTLNSHSASLMTY 97 7899*********************************************99788888888888543........223333333333444454444444 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 s + +e++ +p v++PPekrqr Psayn+fikeei+r+ka+nPd++h+eafs+aaknWa fP+ Vun004594 98 S---DCEEEDLIPMSNIVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPT 163 4...44556667766779***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.2E-63	11	164	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-9	110	163	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.2E-6	113	164	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSSLNHLFDL PEQICYVQCG FCTTILMVSV PCSSLSMVVT VRCGHCTSLL SVNMMKASFV 60 PFHLLASLSH LEPKESSPEQ HDGNKTLNSH SASLMTYSDC EEEDLIPMSN IVNKPPEKRQ 120 RTPSAYNCFI KEEIKRLKAE NPDMAHKEAF STAAKNWANF PPTQCKGDDQ ESCSQTDQVV 180 DLDSQVDPPD AEVNEEDGEG FRGRKVQRNS MFERTAFE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027906806.1	1e-164	axial regulator YABBY 4-like
Swissprot	Q9LDT3	4e-75	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A4D6LPY1	1e-162	A0A4D6LPY1_VIGUN; Uncharacterized protein
STRING	XP_007157432.1	1e-154	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-77	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]