PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun004599

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 218aa MW: 24814.5 Da PI: 7.8096

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45885474	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-34764	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.8	6.2e-19	81	129	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f tae+Aa+a++ a+ +++g Vun004599 81 YRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFATAEDAARAYDDAAVRIRG 129 9*****.******954...4********************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	24.184	80	137	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.47E-22	80	138	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.6E-31	80	137	IPR001471	AP2/ERF domain
Pfam	PF00847	5.7E-12	80	129	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-35	80	143	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-11	81	92	IPR001471	AP2/ERF domain
CDD	cd00018	1.87E-19	81	136	No hit	No description
PRINTS	PR00367	1.9E-11	103	119	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
XEIKMCGGSI ISDFIDVDIK NAPQSTTQHL FSHLHTFHAT SSSTLQPSHP THNKVEDPCE 60 KVKNKRAVAE KGEARVRKTA YRGIRRRPWG KWAAEIRDPR KGVRVWLGTF ATAEDAARAY 120 DDAAVRIRGD KAKLNFSRHH HHQHHSSNNN NPCLSPELTQ PCYQPTFNNL DQDPELAHHI 180 SNLESFLGLE HEQVPMQALP LPEWDPLHDV VLSNHHLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-23	81	136	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	3e-23	81	136	6	62	ATERF1
3gcc_A	3e-23	81	136	6	62	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:9159183}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269\|PubMed:18836139, ECO:0000269\|PubMed:9159183}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027917811.1	1e-157	ethylene-responsive transcription factor RAP2-3-like
Swissprot	P42736	7e-43	RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBL	A0A4D6KTK2	1e-160	A0A4D6KTK2_VIGUN; EREBP-like factor
STRING	XP_007154310.1	4e-83	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16770.1	1e-31	ethylene-responsive element binding protein

Publications ? help Back to Top
Bueso E, et al. The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene. Plant J., 2007. 52(6): p. 1052-65 [PMID:17931347] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen YC, et al. Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance. Sci Rep, 2014. 4: p. 5584 [PMID:24998294] Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis. New Phytol., 2015. 208(2): p. 442-55 [PMID:25988998] Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Sci., 2015. 236: p. 37-43 [PMID:26025519] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Liu W, et al. Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency. Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868 [PMID:28390898] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474]