PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun004651
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 215aa    MW: 24526.1 Da    PI: 6.5123
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45952777PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-13802PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183280254
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
               +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Vun004651 32 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 80
               69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.81E-343191No hitNo description
Gene3DG3DSA:3.30.730.101.5E-333289IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-203290IPR016177DNA-binding domain
PROSITE profilePS5103220.7053289IPR001471AP2/ERF domain
SMARTSM003806.2E-403295IPR001471AP2/ERF domain
PfamPF008472.7E-113281IPR001471AP2/ERF domain
PRINTSPR003673.7E-113344IPR001471AP2/ERF domain
PRINTSPR003673.7E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
XNYSSTSLSH SQTRFTNKFQ PPITIMARPQ QRYRGVRQRH WGSWVSEIRH PLLKTRIWLG  60
TFETAEDAAR AYDEAARLMC GPKARTNFAY NPNDPQLSLS KLLSATLTAK LHKCHMASLS  120
LQMNKQKGSQ KEGEEGSSNS GNAVAGTSVD TKSFRWAEKR HEEVQWVEEY HVEVGEGEAE  180
QQQQFQPVLE DDHIEQMIQE LLDYGSMEFS CVDSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-153188159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499665.11e-144ethylene-responsive transcription factor ERF003
SwissprotQ94AW54e-71ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S3U0W51e-143A0A1S3U0W5_VIGRR; ethylene-responsive transcription factor ERF003
STRINGXP_007150787.11e-127(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]