PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun004735
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 213aa    MW: 23577.2 Da    PI: 6.2977
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45829959PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-4433PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.15e-066889627
               -SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
               C++f +tG C  G++Ck +H++
  Vun004735 68 CPTFEATGSCTEGSKCKLHHPK 89
               *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.3991339IPR000571Zinc finger, CCCH-type
SMARTSM003560.00551338IPR000571Zinc finger, CCCH-type
SMARTSM003560.474066IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2164067IPR000571Zinc finger, CCCH-type
SMARTSM003560.866789IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.2586890IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
XTPNCKLTHQ VIPERMPDCS YFLQGLCSNS NCPYRHVNVN PNASICEGFL RGYCADGNEC  60
RKKHSYVCPT FEATGSCTEG SKCKLHHPKK QSKGKKRKRS GDQNKTRGRY FGSIPAADVS  120
ESGMMVAANR HKQSSEIEEE LSDYISLDVV SEEVADTDDL SFDPAELCEN DSLDDLDELI  180
KPVLLLKTKF TSQSPDSHIL HASGGDLGPL LMR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430043.11e-126PREDICTED: uncharacterized protein At1g21580 isoform X2
SwissprotQ3ED781e-63C3H7_ARATH; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A4D6MEF31e-134A0A4D6MEF3_VIGUN; Partitioning defective protein 6
STRINGXP_007161425.11e-116(Phaseolus vulgaris)
Publications ? help Back to Top
  1. Hématy K, et al.
    The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis.
    PLoS Genet., 2016. 12(2): p. e1005817
    [PMID:26828932]