PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun004802
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 210aa    MW: 24347.6 Da    PI: 7.088
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45941238PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-6945PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.7e-35401342102
                   HHHHHHHHHC...TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                   Fl k+y++le   +e++++++sw+e+g+sfvv+ + ef+++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++         weFkh++F++g +++l 
     Vun004802  40 FLLKTYDLLEegeSEDITKIVSWNEEGTSFVVWSPAEFSEHTLPRYFKHNNFSSFIRQLNTYGFKKMSSKR---------WEFKHEKFQRGCRHMLG 127
                   9********977778999**************************************************999.........***************** PP

                   XXXXXXX CS
  HSF_DNA-bind  96 kikrkks 102
                   +i rkk 
     Vun004802 128 EITRKKC 134
                   ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3631126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-4336132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-2937132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.5E-3140132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-124063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-128193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-1294106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVDKSVVELN LGLGKNNDNV VGGGHAHAGQ SPRQRCPAPF LLKTYDLLEE GESEDITKIV  60
SWNEEGTSFV VWSPAEFSEH TLPRYFKHNN FSSFIRQLNT YGFKKMSSKR WEFKHEKFQR  120
GCRHMLGEIT RKKCEPSVFP AYLKSSSEEN ATSSTEENNE QVLMEENKNL KKERLELQMQ  180
IDECKELEMK LLACLSQFMD TQQSKIRRLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A1e-16361324106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A1e-16361324106HEAT-SHOCK TRANSCRIPTION FACTOR
5d5u_B2e-162413217129Heat shock factor protein 1
5d5v_B2e-162413217129Heat shock factor protein 1
5d5v_D2e-162413217129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027921453.11e-157heat stress transcription factor B-2a-like
TrEMBLA0A4D6L7901e-155A0A4D6L790_VIGUN; Heat shock transcription factor 1
STRINGXP_007159323.11e-126(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-38heat shock transcription factor B2A