PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun004853

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-YA

Protein Properties

Length: 207aa MW: 23010.2 Da PI: 7.3438

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45814940	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-20467	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.4	4.2e-32	111	167	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +++rkpylheSRh hAlrRpRg+gGrF Vun004853 111 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IRNRKPYLHESRHMHALRRPRGCGGRF 167 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.2E-36	109	170	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.942	110	170	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.5E-27	112	167	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.5E-24	113	135	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	115	135	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.5E-24	144	167	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MTSAHNLTDN EDEGQHQSES QVQSPSANGI SDSGISTQNV NVQYATPGQL GAGHAMVPPV 60 YPYPDPYYRS IFAPYDTQPY PPQAYGAQPM VHLQLMGIQQ AGVPLPTDAV EEPVFVNAKQ 120 YHGILRRRQS RAKAESENKA IRNRKPYLHE SRHMHALRRP RGCGGRFLNS KKEEENQHND 180 VASADKSQSN INLNSDKNDQ TSSDRTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	110	183	1	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027921110.1	1e-153	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q84JP1	4e-69	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A4D6L7R7	1e-152	A0A4D6L7R7_VIGUN; Nuclear transcription factor Y
STRING	XP_007159545.1	1e-135	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-59	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]