PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun004878
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 207aa    MW: 22908.2 Da    PI: 6.8535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45820195PU_refUnigeneView CDS
PUT-167a-Vigna_unguiculata-27391PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-0992118127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C +f++tG Ck+ ++CkF+H++
  Vun004878  92 PGEPECGYFLKTGDCKFKSNCKFHHPK 118
                5799*********************96 PP
2zf-CCCH37.25e-12139163226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C++++r+G+Ck+G+ CkF H+
  Vun004878 139 DQSVCSHYSRYGICKFGPACKFDHP 163
                5789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.6E-491118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4691119IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-793118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-696120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6135163IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577137165IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4142163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
XSLQGVSRPS VPSWSSPRSL NEASPFVPMM LSPTQGVSTQ SSDWNGYQAS VYLPERNMHP  60
PSTFVLNNPT VDTNVYLHHQ KQISVEEFPE RPGEPECGYF LKTGDCKFKS NCKFHHPKNR  120
IARLPPCNLS DKGLPLRPDQ SVCSHYSRYG ICKFGPACKF DHPINLQPFN DXLGLGDQPY  180
SNSASVEVVA GIGESTSETD VTIQQSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027919607.11e-142zinc finger CCCH domain-containing protein 43-like
SwissprotQ9STM43e-68C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A4D6KTE61e-141A0A4D6KTE6_VIGUN; Serine/threonine-protein kinase/endoribonuclease IRE1
STRINGXP_007155512.11e-136(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.19e-66C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]