PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun004930

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WOX

Protein Properties

Length: 205aa MW: 23427.6 Da PI: 6.1633

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45806305	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-9364	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.8	6.9e-22	80	140	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Vun004930 80 RQRWTPTPLQLQILERIFDEgNGTPSKQKIKEITTELgqhgQISETNVYNWFQNRRARSKR 140 89***************99************************************97 PP
2	Wus_type_Homeobox	101.3	6.9e-33	79	142	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL ++G+i+++NV++WFQNr+aR+++kq Vun004930 79 ARQRWTPTPLQLQILERIFDEGNGTPSKQKIKEITTELGQHGQISETNVYNWFQNRRARSKRKQ 142 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-18	76	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.143	76	141	IPR001356	Homeobox domain
SMART	SM00389	3.2E-15	78	145	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-19	79	142	IPR009057	Homeodomain-like
CDD	cd00086	5.69E-14	80	142	No hit	No description
Pfam	PF00046	1.2E-19	80	140	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MEAEHHQDTS TAIESLYVKV MTDEQMELLR QQISVYATIC EQLVEMHKAV TTQQDLAGLR 60 LGNLYCDPLM ACSGHKITAR QRWTPTPLQL QILERIFDEG NGTPSKQKIK EITTELGQHG 120 QISETNVYNW FQNRRARSKR KQLAPAAPEP EAEAEVESPR EKKIRAAESV QVVQPFENSS 180 PHRMKDMYIH SPDLGFDQLL SKIEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027902002.1	1e-153	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	8e-79	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A4D6NVY6	1e-152	A0A4D6NVY6_VIGUN; Uncharacterized protein
STRING	XP_007136031.1	1e-135	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-73	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]