PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun004933

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-YB

Protein Properties

Length: 205aa MW: 23097.8 Da PI: 5.8105

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45823920	PU_ref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-22751	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	79.4	4.8e-25	60	143	3	86
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al+ lGf dy+e++ + Vun004933 60 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGDYIEEVYAA 143 6899***************************************************************************98654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.8E-39	57	189	IPR009072	Histone-fold
SuperFamily	SSF47113	6.54E-36	61	191	IPR009072	Histone-fold
Pfam	PF00808	3.5E-22	63	128	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
XIHRIEKQHH HHTTPHLVFI NMGLSASASA MSTFFPSSXQ LTHRPLFIRM EPMDIVGKAK 60 EDASLPKATM TKIIKEMLPP DVRVARDAQD LLIECCVEFI NLVSSESNEV CNKEERRTIA 120 PEHVLKALGV LGFGDYIEEV YAAYEQHKLE TMQDSLKGAK WSNRAEMTEE EALAEQQRMF 180 AEARARMNGG AITPKQPDAD QSLES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-34	61	184	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027902427.1	1e-113	protein Dr1 homolog isoform X1
Swissprot	P49592	2e-90	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A371F1G2	1e-111	A0A371F1G2_MUCPR; Protein Dr1-like protein (Fragment)
TrEMBL	A0A4D6NK19	1e-111	A0A4D6NK19_VIGUN; Nuclear transcription factor Y
STRING	XP_007138352.1	1e-110	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	1e-92	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]