PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005065
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 200aa    MW: 21231.7 Da    PI: 9.2009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45805600PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-27969PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-1863113155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a+++a+++++g
  Vun005065  63 CNYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPTAIGAALAYDEAARAMYG 113
                56*****999.**********8...2.359***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.02E-3063122No hitNo description
PfamPF008471.2E-1263113IPR001471AP2/ERF domain
SMARTSM003803.8E-3764127IPR001471AP2/ERF domain
PROSITE profilePS5103221.64164121IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2064121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-3164122IPR001471AP2/ERF domain
PRINTSPR003674.3E-96576IPR001471AP2/ERF domain
PRINTSPR003674.3E-987103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MLAKAHSKGE GTKSLAKILA KWKEYNAQLD SCSDADKPVR KVPAKGSKKG CMKGKGGPEN  60
SRCNYRGVRQ RTWGKWVAEI REPNRGNRLW LGTFPTAIGA ALAYDEAARA MYGSCARLNF  120
PNVSVSSFSE ESLKDSPMAN HSGSSMAVSA NESMVSPTNS KGGGAEEDVD MEPISLSLSV  180
KHENGEGESG ISSSPPSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1864121563ATERF1
3gcc_A5e-1864121563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027926146.11e-145putative dehydration-responsive element-binding protein 2H isoform X1
SwissprotQ8LFR29e-50DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
SwissprotQ9SIZ05e-50DRE2H_ARATH; Putative dehydration-responsive element-binding protein 2H
TrEMBLA0A4D6N8G21e-144A0A4D6N8G2_VIGUN; EREBP-like factor
STRINGGLYMA12G32400.11e-107(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-44DRE-binding protein 2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]