PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005231
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 194aa    MW: 21394.9 Da    PI: 6.1036
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45804368PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-28746PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.7e-06326226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k++lC+ffa  G C  G+ C ++H+
  Vun005231  3 KRVLCKFFAH-GACLKGEHCEYSHD 26
               99****6666.*************5 PP
2zf-CCCH27.46e-093453525
               --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
               +C f+++ G C yG+rC++ H
  Vun005231 34 ICTFYQK-GVCAYGSRCRYDH 53
               7******.************* PP
3zf-CCCH19.51.7e-06146166526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ fa+ G C++G++C+ +Hg
  Vun005231 146 ICS-FAAAGNCPRGEKCPHIHG 166
                677.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.382956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00243055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-63153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-43453IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-63453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389141168IPR000571Zinc finger, CCCH-type
SMARTSM003560.011142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4146166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEYSHDWKDP PNNICTFYQK GVCAYGSRCR YDHIKASQAQ  60
SSIPSSSVIE NHTVVSDTGA FGNIITTSNG VGTTAELSLS SSPYILPSEP AWNHELVWNP  120
EIEYYEILGE DNVGQSIITS PSEISICSFA AAGNCPRGEK CPHIHGDLCP TCGKHCLHPF  180
RPEEREEHMK TCES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027926555.11e-142putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N43e-63C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A4D6M4081e-141A0A4D6M408_VIGUN; Cleavage and polyadenylation specificity factor subunit 4
STRINGXP_007148855.11e-127(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-55C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]