PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005276
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 192aa    MW: 22012.6 Da    PI: 9.4295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45815961PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-24436PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000354973123
               EEETTTTEEESSHHHHHHHHHH..T CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
               + C  C+k ++  ++++ H+++  H
  Vun005276 49 FYCDLCNKQYKLAMEFEAHLSSydH 73
               78*****************987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-54783No hitNo description
PfamPF121718.8E-64976IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805173IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
GSLEGLENFL QFLLPGGFFC LLRAHYENSG VAEREQKIQT EVKEIRKVFY CDLCNKQYKL  60
AMEFEAHLSS YDHNHRKRFK QMKEMHGGSS RDDRQKREQQ RQEREMAKFA QIADAQKQQR  120
LQLQQESGSG TVSSESRTAT ALTDQEQRNT LKFGFSSKGS ASKITFGTKK QNVAKKQSAP  180
ISSIFSNDSD EE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027937647.11e-111G patch domain-containing protein 8 isoform X1
TrEMBLA0A4D6MEB91e-110A0A4D6MEB9_VIGUN; Calcium homeostasis endoplasmic reticulum protein
STRINGXP_007163288.12e-98(Phaseolus vulgaris)