PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005455
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 186aa    MW: 20813.7 Da    PI: 8.7699
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45788782PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-4884PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY232.31.1e-7161635170
      YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104
                 ++e+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++llsvn+  + q  ++++       ++l    k ++++l++++  +++  +s + ++  e+
  Vun005455   6 MATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQPFPSQET------QHLSTVAKLQRQHLSVQEACSKELGSSSKCKS-FES 98 
                579**********************************************999999996......34444444444444444444433333333333.356 PP

      YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 ++e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Vun005455  99 VEHEQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 163
                6788899999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.6E-737163IPR006780YABBY protein
SuperFamilySSF470951.7E-8106156IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.9E-5111157IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSMDMMATER VCYVHCNFCN TTLAVSVPCS SLLTIVTVRC GHCANLLSVN MGASLQPFPS  60
QETQHLSTVA KLQRQHLSVQ EACSKELGSS SKCKSFESVE HEQPRIPPIR PPEKRQRVPS  120
AYNRFIKEEI QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLKLDGNKQ GKLDQGDATQ  180
KSNGFY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027926993.11e-139putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB02e-80YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A0S3SH301e-136A0A0S3SH30_PHAAN; Uncharacterized protein
STRINGXP_007150001.11e-123(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.15e-74YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]