PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005511
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 183aa    MW: 19852.8 Da    PI: 6.5179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45923132PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-12012PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-202170255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr ++ +gr++AeIrdp +   ++r++lg+f++ae+Aa+a++aa++ l+g
  Vun005511 21 KYRGVRKRP-WGRFAAEIRDPLK---KARVWLGTFDSAEDAARAYDAAARTLRG 70
               8********.**********743...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.39E-202078No hitNo description
Gene3DG3DSA:3.30.730.109.4E-332178IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-222179IPR016177DNA-binding domain
PROSITE profilePS5103223.8282178IPR001471AP2/ERF domain
SMARTSM003801.3E-362184IPR001471AP2/ERF domain
PfamPF008473.0E-132170IPR001471AP2/ERF domain
PRINTSPR003679.5E-112233IPR001471AP2/ERF domain
PRINTSPR003679.5E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGGGGAAGES GSRPVFFKEQ KYRGVRKRPW GRFAAEIRDP LKKARVWLGT FDSAEDAARA  60
YDAAARTLRG PKAKTNFPLP PPFYHPDPFT DHRYFAGPGE PFHDHRQPTS SGMSSTVESF  120
SGPRAAAATA TLRXAVVEDG DGDNAASSFQ REPLPFDLNV LPLEDSDVGN GVDNDMFCTV  180
LCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-221879264ATERF1
3gcc_A5e-221879264ATERF1
5wx9_A9e-22978272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521856.11e-103ethylene-responsive transcription factor 3
SwissprotO803393e-40ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A1S3VTZ81e-102A0A1S3VTZ8_VIGRR; ethylene-responsive transcription factor 3
STRINGXP_007146520.11e-100(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-26ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]