PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun005544

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 182aa MW: 20784.1 Da PI: 7.5098

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45832891	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-22386	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	84	137	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq++ Le+ F +++++ e++ +LAk+lgL+ rqV +WFqNrRa++k Vun005544 84 KKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWK 137 56689************************************************9 PP
2	HD-ZIP_I/II	113.8	1e-36	83	165	1	84
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 ekkrrls eqv++LE+sF+ee+kLeperK +la+eLglqprqva+WFqnrRAR+ktk++Ekdy++L++a+ ++++ + L +e+ Vun005544 83 EKKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKRMEKDYDSLQHAIM-ISSQFDDLLREK 165 69****************************************************************99875.455555554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.42E-20	70	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.572	79	139	IPR001356	Homeobox domain
SMART	SM00389	3.0E-19	82	143	IPR001356	Homeobox domain
CDD	cd00086	2.21E-17	84	140	No hit	No description
Pfam	PF00046	5.5E-17	84	137	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.3E-20	86	147	IPR009057	Homeodomain-like
PRINTS	PR00031	7.8E-6	110	119	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	114	137	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.8E-6	119	135	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MVAGTVFSAA SNLTTLLPNQ TPPSASQPLD SLFHSSSSSP FLGSRSIVSF GDVQGGKGCN 60 GSFFLPYDEN GDEDTDEYFH QPEKKRRLSV EQVQFLEKSF DEENKLEPER KIRLAKELGL 120 QPRQVAIWFQ NRRARWKTKR MEKDYDSLQH AIMISSQFDD LLREKISSKL STKLSEKCLE 180 RX

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017419795.1	1e-101	PREDICTED: homeobox-leucine zipper protein ATHB-16-like
Swissprot	Q8LC03	7e-33	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A4D6NJA6	1e-106	A0A4D6NJA6_VIGUN; Homeobox-leucine zipper protein
STRING	XP_007138213.1	5e-91	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-34	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]