PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun005583

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 181aa MW: 20203.9 Da PI: 7.7662

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45938248	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-35005	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	112.9	2.2e-35	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk +r+C ++ ++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdP+yG++g i lq+++ +l+++la +k++ Vun005583 11 SCAACKGGKRRCIPNWIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPIYGCIGAIALLQRKMVELQHDLAIAKDR 110 6*********************************************************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.055	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-34	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MKGYEPRSSS SCAACKGGKR RCIPNWIFAP YFRSDECKKF AKVHKVFGAS NVSKILIEVP 60 EEQREDTVNS LAYEAEARLR DPIYGCIGAI ALLQRKMVEL QHDLAIAKDR LARYAAAATT 120 TTPSAAATTT FNSHVSLPPF PEYFSCNDFS DNFCHNSSSS QSPPLTRHEM VDDFIQIPYI 180 L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	6	130	6	130	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	6	130	6	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027939779.1	1e-130	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	5e-59	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A4D6MKQ4	1e-128	A0A4D6MKQ4_VIGUN; Lateral organ boundary
STRING	XP_007141747.1	1e-106	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-60	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]