PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005647
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 178aa    MW: 19923.3 Da    PI: 10.6793
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45821418PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-35123PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31.1e-322076158
  CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
               +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  Vun005647 20 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGNGGRF 76
               69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-351879IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.4691979IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-282176IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-242244IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068602444IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.3E-245376IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
DAPFIGMPHA RMALPLEMAQ EPVYVNAKQY QGILRRRQAR AKAELEKKLI KVRKPYLHES  60
RHQHAMRRAR GNGGRFAKKT EVEASKHTNK EKNMGAAGPV SVNSSDSAKT WNSASVQQDA  120
RGSQVHERFE KHNYANVLQS SSAFCLHSGE RVEEGDCSGQ QRGSISSEQS SQRRLAIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-202084266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027939755.11e-128nuclear transcription factor Y subunit A-9-like
SwissprotQ945M93e-57NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A4D6MML51e-126A0A4D6MML5_VIGUN; Nuclear transcription factor Y
STRINGXP_007142467.11e-112(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-59nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]