PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005648
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 178aa    MW: 20598.3 Da    PI: 6.2721
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45940020PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-6125PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS214.74.9e-662178198374
       GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                pgEal+Vn+++qlh++ de+vs+ +erd++L++vk l+Pk+v++veq++++n+++Fl+rf+ea +yysa+fd+l+a+lpres++r++vEr++l+++ivn+
  Vun005648   2 PGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKCLNPKLVTIVEQDMNTNTSPFLQRFVEAYNYYSAVFDTLDATLPRESQDRMNVERQCLAKDIVNI 101
                79************************************************************************************************** PP

       GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                vaceg++r+er e ++kWr+rl++aGF+p p+s+++ + ++ l+ k + d ++++ee g+l +gW+d++L+++SaW+
  Vun005648 102 VACEGEDRIERYEVAGKWRARLTMAGFTPSPISTNVREAISKLIIKQYCDRFKIKEEMGALHFGWEDKNLIVTSAWK 178
                ********************************************9999888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.3231158IPR005202Transcription factor GRAS
PfamPF035141.7E-632178IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
XPGEALVVNF AFQLHHMRDE TVSTVNERDQ LLRMVKCLNP KLVTIVEQDM NTNTSPFLQR  60
FVEAYNYYSA VFDTLDATLP RESQDRMNVE RQCLAKDIVN IVACEGEDRI ERYEVAGKWR  120
ARLTMAGFTP SPISTNVREA ISKLIIKQYC DRFKIKEEMG ALHFGWEDKN LIVTSAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-272178199375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027939579.11e-128scarecrow-like protein 1
RefseqXP_027939581.11e-128scarecrow-like protein 1
SwissprotQ9SDQ34e-97SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A4D6MHP91e-126A0A4D6MHP9_VIGUN; DELLA protein
STRINGXP_007161385.11e-126(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.12e-99SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]