PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005781
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 173aa    MW: 19651.3 Da    PI: 10.2581
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45799002PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-18312PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.18.2e-13671521499
      NF-YC  14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                 d k + +P+ ri+ ++k ++   ++s ea   + ka e f+ ++t  ++  + + +++ l    +a++v++   +dfl d vp++
  Vun005781  67 DDEKANVFPMNRIRTMIKGEDPDMRVSQEAVLAINKAVEKFLEQFTQDAYACCVQDRKKCLGYKHVANVVSKKRRYDFLSDFVPEK 152
                3567889***********87666789*********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.12E-1748145IPR009072Histone-fold
PfamPF008081.3E-1374136IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.0E-2374151IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MASSNTPKPH KSPKAKKGEI STTQNKTKEE TRDITKEENQ KKKNKKPKLS NGNSKHPHEK  60
GAERSGDDEK ANVFPMNRIR TMIKGEDPDM RVSQEAVLAI NKAVEKFLEQ FTQDAYACCV  120
QDRKKCLGYK HVANVVSKKR RYDFLSDFVP EKVKAEDALR ERDASGNGVF QKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122140RKKCLGYKHVANVVSKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027909249.11e-113DNA polymerase epsilon subunit 4
TrEMBLA0A0S3SCL11e-105A0A0S3SCL1_PHAAN; Uncharacterized protein
STRINGXP_007132235.13e-96(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-28nuclear factor Y, subunit C10