PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun005788

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 173aa MW: 20081.2 Da PI: 6.0211

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45804426	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-22899	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.7	9.8e-32	2	111	11	128
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy 109 deelvv++L++k++ +++ +vi+++++y+++Pw+L+ ++ ae ++wy++s+r +nr+t +gyWk tg +++v+s+ +++ vg+kk +vf+ Vun005788 2 DEELVVHFLHRKASLLPCHP-DVIPDLELYQYDPWQLHGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGMEEPVVSSsNNKRVGMKKYFVFH 92 9**************999.99**********977778899**984........58**************9877888****** PP NAM 110 kgrapkgektdWvmheyrl 128 g+a g kt+W+m+eyrl Vun005788 93 VGEAAAGIKTNWIMQEYRL 111 ***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.51	1	142	IPR003441	NAC domain
Pfam	PF02365	1.1E-16	2	111	IPR003441	NAC domain
SuperFamily	SSF101941	2.62E-41	2	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
XDEELVVHFL HRKASLLPCH PDVIPDLELY QYDPWQLHGR ALAEGNQWYY YSRRTQNRVT 60 GNGYWKPTGM EEPVVSSSNN KRVGMKKYFV FHVGEAAAGI KTNWIMQEYR LSDSASSTRS 120 SKRKPQPKAD YKKWVICRVY ERNGEEDNGT ELSCLDEVFL SLDDDLDEIS LPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-32	2	143	30	169	NAC domain-containing protein 19
3swm_B	2e-32	2	143	30	169	NAC domain-containing protein 19
3swm_C	2e-32	2	143	30	169	NAC domain-containing protein 19
3swm_D	2e-32	2	143	30	169	NAC domain-containing protein 19
3swp_A	2e-32	2	143	30	169	NAC domain-containing protein 19
3swp_B	2e-32	2	143	30	169	NAC domain-containing protein 19
3swp_C	2e-32	2	143	30	169	NAC domain-containing protein 19
3swp_D	2e-32	2	143	30	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027931410.1	1e-128	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	8e-76	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A4D6KJJ3	1e-126	A0A4D6KJJ3_VIGUN; Uncharacterized protein
STRING	XP_007148437.1	1e-113	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-69	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]