PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun006135
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 157aa    MW: 17178.2 Da    PI: 9.3034
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45842308PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-9539PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer85.46.2e-271058357
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                 k +Y+eCl+NhAaslG++a+DGCgEf+ +        +l+CaACgCHRnFHR+ +
    Vun006135 10 KSVYRECLRNHAASLGSYATDGCGEFTVD------GGGLQCAACGCHRNFHRKVK 58
                 568************************98......458**************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.3E-221257IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.2131357IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.7E-211356IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-161356IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.36E-1566136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-2770138IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-2778136IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEGGSGEKWK SVYRECLRNH AASLGSYATD GCGEFTVDGG GLQCAACGCH RNFHRKVKYP  60
VGPESPGGMD YGGEGGSKKR FRSKFSTDQK EKMLAFAEKL GWKLQRKDLD DEIERFCRSI  120
GVSRQVFKVW MHNHKNSSSS SSASASASTG NISSLTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-23771411679ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027921541.11e-114zinc-finger homeodomain protein 9-like
SwissprotQ9SB616e-41ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A4D6LAL31e-113A0A4D6LAL3_VIGUN; Uncharacterized protein
STRINGXP_007160565.11e-102(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-42homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]