PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun006165
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 155aa    MW: 17071.2 Da    PI: 9.9231
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45839384PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-27705PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-1970103134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Vun006165  70 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 103
                99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-1664114IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.83364100IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-1565126No hitNo description
Gene3DG3DSA:3.30.50.103.3E-1568101IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.83E-1569116No hitNo description
PfamPF003204.5E-1770104IPR000679Zinc finger, GATA-type
PROSITE patternPS0034407095IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
XFSPLFSIPF VQALQKQQRA SGSESDFGAN VVGNMSNKVK SHKKKDLSLL SEDVEMMRSS  60
HLVSDPPRKC MHCEVTKTPQ WREGPMGPKT LCNACGVRYR SGRLFPEYRP AASPTFVASL  120
HSNCHKKVVE MRSKVQEGVE GSVFASSNLH GNSVG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027929728.11e-110GATA transcription factor 11-like
SwissprotQ9SV303e-39GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A4D6NB461e-108A0A4D6NB46_VIGUN; Uncharacterized protein
STRINGXP_007150193.16e-98(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-41GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]