PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun006237
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 151aa    MW: 17626.2 Da    PI: 8.057
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45956853PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-31568PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS191.84.3e-592151224374
       GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                rd++L+lv+slsPkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr+++eri+vE+++l+r++vn++aceg er+erhe l+kWr+r+ +aG
  Vun006237   2 RDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPRDHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAG 101
                799************************************************************************************************* PP

       GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                F+p+pls+ ++ ++k ll++++++ yr+ee++g+l+lgW++r Lv+ +aW+
  Vun006237 102 FTPYPLSSLVNGTIKKLLENYSNR-YRLEERDGALYLGWMNRDLVASCAWK 151
                **********************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.6311132IPR005202Transcription factor GRAS
PfamPF035141.5E-562151IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
DRDRLLRLVR SLSPKVVTLV EQESNTNTAA FFPRFLETLD YYTAMFESID VTLPRDHKER  60
INVEQHCLAR DLVNIIACEG VERVERHEVL GKWRSRFAMA GFTPYPLSSL VNGTIKKLLE  120
NYSNRYRLEE RDGALYLGWM NRDLVASCAW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-254151224375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027940397.11e-105scarecrow-like transcription factor PAT1
RefseqXP_027940398.11e-105scarecrow-like transcription factor PAT1
SwissprotQ9LDL72e-95PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A392NKL81e-104A0A392NKL8_9FABA; Scarecrow-like transcription factor PAT1
TrEMBLA0A4D6MLT91e-104A0A4D6MLT9_VIGUN; DELLA protein
STRINGXP_007142502.11e-104(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.25e-90GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]