PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun006465
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 136aa    MW: 15282.1 Da    PI: 6.797
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45875686PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-33390PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.8e-113074345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+eE +l+ +a + + ++   +W+++a++++ g+t  +++  + 
        Vun006465 30 KWTPEENKLFENALAVHDKDtpdRWHKVAEMIP-GKTVVDVIKQYK 74
                     8********************************.******998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6552681IPR017884SANT domain
Gene3DG3DSA:1.10.10.605.6E-62675IPR009057Homeodomain-like
SMARTSM007172.7E-112779IPR001005SANT/Myb domain
SuperFamilySSF466892.96E-132984IPR009057Homeodomain-like
CDDcd001672.34E-93076No hitNo description
PfamPF002491.1E-93075IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MKWETLALSP TPCSPNSSTN WLVENNRSTK WTPEENKLFE NALAVHDKDT PDRWHKVAEM  60
IPGKTVVDVI KQYKELEADV SNIEAGLIPV PGYSTATSPF TLDWVNTPGY DGFKGSGKRS  120
SSVRPHEQER KKGVPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-17311031183RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027940816.18e-98transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H76e-49DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A4D6MHG12e-96A0A4D6MHG1_VIGUN; Protein MYSM1
STRINGXP_007142227.11e-94(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-49MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]