PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun006488
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 134aa    MW: 14762.6 Da    PI: 4.3399
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45914174PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-21498PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.8e-111155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e d+ + +a + ++ +   +W++Ia+ ++ g+t +++k ++ 
        Vun006488 11 EWSREQDKAFENALATHPEDasdRWEKIAADVP-GKTIEEIKQHYE 55
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-9860IPR001005SANT/Myb domain
PROSITE profilePS500906.9921058IPR017877Myb-like domain
SuperFamilySSF466897.8E-121066IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-61155IPR009057Homeodomain-like
CDDcd001671.69E-91158No hitNo description
PfamPF002491.3E-91155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MTVDEVDSSS EWSREQDKAF ENALATHPED ASDRWEKIAA DVPGKTIEEI KQHYELLVED  60
VSQIESGCVP LPSYNSSSEG STSHASDEGA GKKGTGVGNF NSESNQGTKA SRSDQERRKG  120
IAWTEDEHRL FLLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-21877776RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027913929.13e-93transcription factor SRM1-like
RefseqXP_027913930.13e-93transcription factor SRM1-like
RefseqXP_027913931.13e-93transcription factor SRM1-like
RefseqXP_027913932.13e-93transcription factor SRM1-like
SwissprotQ9FNN64e-54SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1S3VR166e-90A0A1S3VR16_VIGRR; transcription factor SRM1
STRINGXP_007153178.14e-90(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-56MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]