PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun006628
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 123aa    MW: 13984.7 Da    PI: 6.5128
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45799698PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-21130PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1757.6e-5511107197
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                ++eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatl f+dy++plk yl+kyrelege+
  Vun006628  11 MKEQDRLLPIANVGRIMKQTLPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLRFDDYADPLKRYLHKYRELEGER 107
                58*********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.3E-529114IPR009072Histone-fold
SuperFamilySSF471134.81E-4014113IPR009072Histone-fold
PfamPF008082.2E-281781IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.5E-194563No hitNo description
PROSITE patternPS0068504864IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.5E-196482No hitNo description
PRINTSPR006154.5E-1983101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
GSDSCAQDGV MKEQDRLLPI ANVGRIMKQT LPPNAKISKE AKETMQECVS EFISFVTGEA  60
SDKCHKEKRK TVNGDDICWA LATLRFDDYA DPLKRYLHKY RELEGERANQ NKSNTYENNI  120
ANI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4411102192Transcription factor HapC (Eurofung)
4g92_B1e-4411102192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027935662.13e-87nuclear transcription factor Y subunit B-5-like
SwissprotO822483e-59NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A4D6MYM06e-86A0A4D6MYM0_VIGUN; Nuclear transcription factor Y
STRINGXP_007144547.13e-79(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-61nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]