PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun006638
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 122aa    MW: 14011.1 Da    PI: 9.7045
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45820078PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-17326PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.34.7e-291059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               +i+n + rqvtfskRr g++KKAeELSvLCda++a+iifsstgkl+eyss
  Vun006638 10 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADIALIIFSSTGKLFEYSS 59
               69**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.389161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.75E-40277No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-28323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-32383IPR002100Transcription factor, MADS-box
PfamPF003194.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADIALIIFSS TGKLFEYSSS  60
SMKEILERHH LHSKNLAKME QPSLELQLVE NSNCTRLSKE VAEKSHQLKQ LRGEDLQGLN  120
IE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22169169MEF2C
5f28_B2e-22169169MEF2C
5f28_C2e-22169169MEF2C
5f28_D2e-22169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027914473.11e-81MADS-box protein SVP
SwissprotQ9FUY68e-71JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A4D6LRV13e-80A0A4D6LRV1_VIGUN; MADS-box transcription factor
STRINGGLYMA01G02880.15e-80(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]