PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun007201
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CPP
Protein Properties Length: 405aa    MW: 44098.7 Da    PI: 8.3246
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-22598PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.32.3e-16116154240
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk 
  Vun007201 116 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKP 154
                689**********************************96 PP
2TCR51.22.4e-16201240140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Vun007201 201 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTY 240
                589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.2E-19115156IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.747116241IPR005172CRC domain
PfamPF036387.3E-12118153IPR005172CRC domain
SMARTSM011142.6E-17201242IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.9E-12203239IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
XHSGDSRKCV LPGIGLHLNA LASLNDCKNI KIETLISGRQ TNLPSSSSSL QLSASQDHQL  60
SLVPISVEKD LEPSENEVQP GEDCTQPLVH MAGEDLQQNS PKKKRRRLEP DGEGESCKRC  120
NCKKSKCLKL YCECFAAGVY CIEPCSCRDC FNKPIHVDTV LQTRQQIESR NPLAFAPKVI  180
RSSDSVPEIG DDPNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSIS CRCEGCKNTY  240
GRKDGSVLSG IEAKPEEETE AGEKAVMENA SHKTETQNTE EHPDHALPTT PLRLSRSLIP  300
LPFSSKGKPP RSFVTTISSS GLFVSQKLGK SSAPRSQPKF EMPVQTIPDD DSPVTCIKTS  360
SPNGKRISSP NCDVGSSPTR RGGRKLILQS IPSFPSLTPH NLRSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1612023814120Protein lin-54 homolog
5fd3_B1e-1612023814120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107PKKKRRRL
2101106KKKRRR
3103107KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027937112.10.0protein tesmin/TSO1-like CXC 2
SwissprotF4JIF51e-122TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A4D6N8570.0A0A4D6N857_VIGUN; Lin-54 family
STRINGXP_007143298.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-93TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]