PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun007384

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 366aa MW: 40142.9 Da PI: 6.2855

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-29591	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	455.1	4.3e-139	1	360	6	374
GRAS 6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105 ++cAeav++++l+la+al++++ la++++ +m+++a+yf++ALa+r+++ + p+et +++ s+ l++ f+e +P+lkf+h+taNqaIlea Vun007384 1 MACAEAVQQENLKLADALVKHVGILAASQAGAMRKVASYFAQALARRIYG--------IFPEETLDSSFSDLLHM--HFYESCPYLKFAHFTANQAILEA 90 68**********************************************........33444444556666665..5****************** PP GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205 ++++ rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +v+++l+dl++++L+++pgEa+aVn Vun007384 91 FATAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCSSLADLDPNMLEIRPGEAVAVN 190 ************************************************************************************************ PP GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres....eerikvErellgreivnvvace 301 +v++lhr+l++++s+++ v+++vk+l+Pk+v++veqea+hn++ Fl+rf+eal+yys+lfdsle + ++ +++ +++ +lgr+i+nvva e Vun007384 191 SVFELHRMLARPGSVDK----VMDTVKKLNPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSSTSTGlgspNQDLLMSELYLGRQICNVVAYE 286 *****99999999....*****************************************88755554677999**************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 g er+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+ Vun007384 287 GVERVERHETLSQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWK 360 ***********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.5E-136	1	360	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	69.027	1	339	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MACAEAVQQE NLKLADALVK HVGILAASQA GAMRKVASYF AQALARRIYG IFPEETLDSS 60 FSDLLHMHFY ESCPYLKFAH FTANQAILEA FATAGRVHVI DFGLKQGMQW PALMQALALR 120 PGGPPTFRLT GIGPPQPDNT DALQQVGWKL AQLAQTIGVQ FEFRGFVCSS LADLDPNMLE 180 IRPGEAVAVN SVFELHRMLA RPGSVDKVMD TVKKLNPKIV TIVEQEANHN GPVFLDRFTE 240 ALHYYSSLFD SLEGSSTSTG LGSPNQDLLM SELYLGRQIC NVVAYEGVER VERHETLSQW 300 RGRMGSAGFD PVHLGSNAFK QASMLLALFA GGDGYRVEEN NGCLMLGWHT RPLIATSAWK 360 LPAPES

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MACAEAVQQE NLKLADALVK HVGILAASQA GAMRKVASYF AQALARRIYG IFPEETLDSS  60
FSDLLHMHFY ESCPYLKFAH FTANQAILEA FATAGRVHVI DFGLKQGMQW PALMQALALR  120
PGGPPTFRLT GIGPPQPDNT DALQQVGWKL AQLAQTIGVQ FEFRGFVCSS LADLDPNMLE  180
IRPGEAVAVN SVFELHRMLA RPGSVDKVMD TVKKLNPKIV TIVEQEANHN GPVFLDRFTE  240
ALHYYSSLFD SLEGSSTSTG LGSPNQDLLM SELYLGRQIC NVVAYEGVER VERHETLSQW  300
RGRMGSAGFD PVHLGSNAFK QASMLLALFA GGDGYRVEEN NGCLMLGWHT RPLIATSAWK  360
LPAPES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-70	3	359	26	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027923038.1	0.0	LOW QUALITY PROTEIN: DELLA protein GAI-like
Swissprot	Q7Y1B6	0.0	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A4D6MAN7	0.0	A0A4D6MAN7_VIGUN; DELLA protein
STRING	XP_007163387.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	0.0	RGA-like 2

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]